Publications

Ali, A.T., Idaghdour, Y, Hodgkinson, A. 2020. Analysis of mitochondrial m1A/G RNA modification reveals links to nuclear genetic variants and associated disease processes. Communications Biology 3: 147.

Ali, A.T., Boehme, L., Antona, G-C, Seitan, V.C., Small, K.S., Hodgkinson, A. 2019. Nuclear Genetic Regulation of the Human Mitochondrial Transcriptome. eLife 8: e41927.

Favé, M.-J. et al (including Hodgkinson, A.). 2018. Gene-by-environment interactions in urban populations modulate risk phenotypes. Nature Communications 9: 827. 

Peischl, S. et al (including Hodgkinson, A.). 2018. Relaxed Selection During a Recent Human Expansion. Genetics 2018: 763-777.

Idaghdour, Y, and Hodgkinson, A. 2017. Integrated genomic analysis of mitochondrial RNA processing in human cancers. Genome Medicine 9: 36. [pdf]

Hodgkinson, A. et al. 2016. A haplotype-based normalization technique for the analysis and detection of allele specific expression. BMC Bioinformatics 17: 364.

Merner et al (including Hodgkinson, A.). 2016. Gain-of-function missense variant in SLC12A2, encoding the bumetanide-sensitive NKCC1 cotransporter, identified in human schizophrenia. Journal of psychiatric research 77: 22-26.

 

Leblond, C. et al (including Hodgkinson, A.). 2016. Replication study of MATR3 in familial and sporadic amyotrphic lateral sclerosis. Neurobiology of aging 37: 209.

 

The 1000 Genomes Project Consortium (including Hodgkinson, A.). 2015. A global reference for human genetic variation. Nature 526: 68-74.

 

Hussin, J.G., Hodgkinson, A. et al. 2015 Recombination affects accumulation of damaging and disease-associated mutations in human populations. Nature Genetics 47(4): 400-4

 

Hodgkinson, A.*, Idaghdour, Y.*, Gbeha, E., Grenier, J.C., Hip-Ki, E., Bruat, V., Goulet, J.P., de Malliard, T. and Awadalla, P. 2014. High-Resolution Genomic Analysis of Human Mitochondrial RNA Sequence Variation. Science 344: 413-415.

 

Kahle et al. (including Hodgkinson, A.). 2014. Genetically encoded impairment of neuronal KCC2 cotransporter function in human idiopathic generalized epilepsy EMBO Rep 15: 766-74.

 

Casals, F.*, Hodgkinson, A.*, et al. 2013. Whole-exome sequencing reveals a rapid change in the frequency of rare functional variants in a founding population of humans. PLoS Genetics 9: e1003815.

 

Hodgkinson, A., Casals, F., Idaghdour, Y., Grenier, J.C., Hernandez, R. and Awadalla, P. 2013. Selective constraint, background selection, and mutation accumulation variability within and between human populations. BMC Genomics. 14:495-504.

 

Samuels, M.A. et al (including Hodgkinson, A.). 2013. Exome sequencing identifies mutations in the gene TTC7A in French-Canadian cases with hereditary multiple intestinal atresia. J Med Genet. 50: 324-329.

Abecasis, G.R. et al (including Hodgkinson, A.). 2012. An integrated map of genetic variation from 1,092 human genomes.  Nature 491: 56-65

 

Hodgkinson, A., and A. Eyre-Walker. 2011. Variation in the Mutation Rate Across Mammalian Genomes. Nature Reviews Genetics 12:756-766.

 

Hodgkinson, A., and A. Eyre-Walker. 2011. The Large-Scale Distribution of Somatic Mutations in Cancer Genomes. Human Mutation 33: 136-143.

 

Hodgkinson, A., and A. Eyre-Walker. 2010. The Genomic Distribution and Local Context of Coincident SNPs in Human and Chimpanzee. Genome Biology and Evolution 2:547-557. [pdf]

 

Hodgkinson, A., and A. Eyre-Walker. 2010. Human triallelic sites: evidence for a new mutational mechanism? Genetics 184:233-241. [pdf]

 

Hodgkinson, A., E. Ladoukakis, and A. Eyre Walker. 2009. Cryptic Variation in the Human Mutation Rate. Plos Biology 7:226-232. [pdf]

 

Eleftherianos, I., Marokhazi, J., Millichap, P., Hodgkinson, A., Sriboonlert, A., Ffrench-Constant, R., Reynolds, S. 2006.  Prior infection of Manduca sexta with non-pathogenic Escherichia coli elicits immunity to pathogenic Photorhabdus luminescens: Roles of immune-related proteins shown by RNA interference. Insect Biochem Mol Biol 36: 517-525.

© 2019 by Alan Hodgkinson

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