Publications
Fairbrother-Browne, A., Garcia-Ruiz, S., Reynolds, R., Ryten, M. and Hodgkinson, A, 2023. ensemblQueryR: fast, flexible and high-throughput querying of Ensembl LD API endpoints in R, Gigabyte, https://doi.org/10.46471/gigabyte.91
Antona, G-C, Ali, A.T., Hodgkinson, A. 2022. Identification of human mitochondrial RNA cleavage sites and candidate RNA processing factors. BMC Biology 20:168.
Saukkonen, A., Kilpinen, H., & Hodgkinson, A. 2022. Highly accurate quantification of allelic gene expression for population and disease genetics. Genome Research. gr.276296.121.
Rodriguez-Algarra, F. et al (including Hodgkinson, A.). 2022. Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states. Genome Biology 23: 1-17.
Fairbrother-Browne, A., Ali, A., Reynolds, R., Garcia-Ruiz, S., Zhang, D., Chen, Z., Ryten, M. and Hodgkinson, A. 2021, Mitochondrial-nuclear cross-talk in the human brain is modulated by cell type and perturbed in neurodegenerative disease. Communications Biology 4: 1262.
Wilson B.C., Boehme L., Annibali A., Hodgkinson A., Carroll T.S., Oakey R.J., Seitan V.C. 2020. Intellectual disability-associated factor Zbtb11 cooperates with NRF-2/GABP to control mitochondrial function. Nature Communications 11: 5469.
Ali, A.T., Idaghdour, Y, Hodgkinson, A. 2020. Analysis of mitochondrial m1A/G RNA modification reveals links to nuclear genetic variants and associated disease processes. Communications Biology 3: 147.
Ali, A.T., Boehme, L., Antona, G-C, Seitan, V.C., Small, K.S., Hodgkinson, A. 2019. Nuclear Genetic Regulation of the Human Mitochondrial Transcriptome. eLife 8: e41927.
Favé, M.-J. et al (including Hodgkinson, A.). 2018. Gene-by-environment interactions in urban populations modulate risk phenotypes. Nature Communications 9: 827.
Peischl, S. et al (including Hodgkinson, A.). 2018. Relaxed Selection During a Recent Human Expansion. Genetics 2018: 763-777.
Idaghdour, Y, and Hodgkinson, A. 2017. Integrated genomic analysis of mitochondrial RNA processing in human cancers. Genome Medicine 9: 36. [pdf]
Hodgkinson, A. et al. 2016. A haplotype-based normalization technique for the analysis and detection of allele specific expression. BMC Bioinformatics 17: 364.
Merner et al (including Hodgkinson, A.). 2016. Gain-of-function missense variant in SLC12A2, encoding the bumetanide-sensitive NKCC1 cotransporter, identified in human schizophrenia. Journal of psychiatric research 77: 22-26.
Leblond, C. et al (including Hodgkinson, A.). 2016. Replication study of MATR3 in familial and sporadic amyotrphic lateral sclerosis. Neurobiology of aging 37: 209.
The 1000 Genomes Project Consortium (including Hodgkinson, A.). 2015. A global reference for human genetic variation. Nature 526: 68-74.
Hussin, J.G., Hodgkinson, A. et al. 2015 Recombination affects accumulation of damaging and disease-associated mutations in human populations. Nature Genetics 47(4): 400-4
Hodgkinson, A.*, Idaghdour, Y.*, Gbeha, E., Grenier, J.C., Hip-Ki, E., Bruat, V., Goulet, J.P., de Malliard, T. and Awadalla, P. 2014. High-Resolution Genomic Analysis of Human Mitochondrial RNA Sequence Variation. Science 344: 413-415.
Kahle et al. (including Hodgkinson, A.). 2014. Genetically encoded impairment of neuronal KCC2 cotransporter function in human idiopathic generalized epilepsy EMBO Rep 15: 766-74.
Casals, F.*, Hodgkinson, A.*, et al. 2013. Whole-exome sequencing reveals a rapid change in the frequency of rare functional variants in a founding population of humans. PLoS Genetics 9: e1003815.
Hodgkinson, A., Casals, F., Idaghdour, Y., Grenier, J.C., Hernandez, R. and Awadalla, P. 2013. Selective constraint, background selection, and mutation accumulation variability within and between human populations. BMC Genomics. 14:495-504.
Samuels, M.A. et al (including Hodgkinson, A.). 2013. Exome sequencing identifies mutations in the gene TTC7A in French-Canadian cases with hereditary multiple intestinal atresia. J Med Genet. 50: 324-329.
Abecasis, G.R. et al (including Hodgkinson, A.). 2012. An integrated map of genetic variation from 1,092 human genomes. Nature 491: 56-65
Hodgkinson, A., and A. Eyre-Walker. 2011. Variation in the Mutation Rate Across Mammalian Genomes. Nature Reviews Genetics 12:756-766.
Hodgkinson, A., and A. Eyre-Walker. 2011. The Large-Scale Distribution of Somatic Mutations in Cancer Genomes. Human Mutation 33: 136-143.
Hodgkinson, A., and A. Eyre-Walker. 2010. The Genomic Distribution and Local Context of Coincident SNPs in Human and Chimpanzee. Genome Biology and Evolution 2:547-557. [pdf]
Hodgkinson, A., and A. Eyre-Walker. 2010. Human triallelic sites: evidence for a new mutational mechanism? Genetics 184:233-241. [pdf]
Hodgkinson, A., E. Ladoukakis, and A. Eyre Walker. 2009. Cryptic Variation in the Human Mutation Rate. Plos Biology 7:226-232. [pdf]
Eleftherianos, I., Marokhazi, J., Millichap, P., Hodgkinson, A., Sriboonlert, A., Ffrench-Constant, R., Reynolds, S. 2006. Prior infection of Manduca sexta with non-pathogenic Escherichia coli elicits immunity to pathogenic Photorhabdus luminescens: Roles of immune-related proteins shown by RNA interference. Insect Biochem Mol Biol 36: 517-525.